Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_035492 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:23541199-23545223 (+) |
| Description | Similar to FAS1: Chromatin assembly factor 1 subunit FAS1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035492 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 31 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g65470 |
Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. |
FASCIATA genes for chromatin assembly factor-1 in arabidopsis maintain the cellular organization of apical meristems.2001 · DOI: 10.1016/s0092-8674(01)00197-0 The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.2006 · DOI: 10.1105/tpc.106.045088 Chromatin assembly factor CAF-1 is required for cellular differentiation during plant development.2006 · DOI: 10.1242/dev.02599 Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants.2006 · DOI: 10.1038/sj.emboj.7601434
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0896300 |
Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006260 | DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006334 | nucleosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006335 | DNA replication-dependent chromatin assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.333; coverage=18.634; evalue=5.52e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009825 | multidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009934 | regulation of meristem structural organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010026 | trichome differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010448 | vegetative meristem growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010449 | root meristem growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044772 | mitotic cell cycle phase transition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045787 | positive regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033186 | CAF-1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051082 | unfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070087 | chromo shadow domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G65470 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.583; coverage=105.466; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:504535 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.333; coverage=18.634; evalue=5.52e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0896300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:770217 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.398; coverage=12.795; evalue=5.89e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10036 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.727; coverage=13.665; evalue=6.75e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4324973 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.559; coverage=105.839; evalue=6.83e-134 | UniProtKB/Swiss-Prot DAT 2026 current_release |