Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_035060`
Query reference	OH1004
Location	Chr08:13180324-13181882 (+)
Description	Similar to AIP1: Protein phosphatase 2C 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035060 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07430`	Involved in the negative regulation of the K(+) potassium channel AKT1 by its dephosphorylation, antagonistically to CIPK proteins (e.g. CIPK23).	No verified direct reference in this release
`At3g11410`	Major negative regulator of abscisic acid (ABA) responses during seed germination and cold acclimation.	Antisense inhibition of protein phosphatase 2C accelerates cold acclimation in Arabidopsis thaliana.2001 · DOI: 10.1046/j.1365-313x.2001.01048.x Physical and functional interaction of the Arabidopsis K(+) channel AKT2 and phosphatase AtPP2CA.2002 · DOI: 10.1105/tpc.000943 ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs.2006 · DOI: 10.1104/pp.105.070128 The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA.2006 · DOI: 10.1104/pp.105.070318 ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed.2007 · DOI: 10.1111/j.1365-313x.2007.03107.x ABI1 and PP2CA phosphatases are negative regulators of Snf1-related protein kinase1 signaling in Arabidopsis.2013 · DOI: 10.1105/tpc.113.114066
`At2g29380`	Probable protein phosphatase 2C 24.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0846300`	Probable protein phosphatase 2C 9.	No verified direct reference in this release
`Os03g0268600`	Together with ABI5, PYL5 and SAPK2, is part of an abscisic acid (ABA) signaling unit that modulates seed germination and early seedling growth.	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009845	seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.091; coverage=77.83; evalue=2.33e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010030	positive regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010360	negative regulation of anion channel activity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048838	release of seed from dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090351	seedling development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.091; coverage=77.83; evalue=2.33e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902039	negative regulation of seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902531	regulation of intracellular signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.125; coverage=75.472; evalue=5.04e-129; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004721	phosphoprotein phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004722	protein serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016791	phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019900	kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019901	protein kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G07430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.848; coverage=76.179; evalue=9.77e-140	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G29380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.865; coverage=69.811; evalue=1.37e-132	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G11410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.796; coverage=87.736; evalue=2.74e-132	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0846300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=63.125; coverage=75.472; evalue=5.04e-129	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0268600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.091; coverage=77.83; evalue=2.33e-116	UniProtKB/Swiss-Prot DAT 2026 current_release