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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_034793
Query referenceOH1004
LocationChr08:160356-162299 (-)
DescriptionSimilar to SGO2: SHUGOSHIN 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_034793 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 6 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04320 Dispensable for both meiotic and mitotic cell cycle progression.
SGO1 but not SGO2 is required for maintenance of centromere cohesion in Arabidopsis thaliana meiosis.2013 · DOI: 10.1007/s00497-013-0231-x
Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.2013 · DOI: 10.1016/j.cub.2013.08.036
SHUGOSHINs and PATRONUS protect meiotic centromere cohesion in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12432
At3g10440 Protects sister chromatid centromere cohesion in meiosis I but not through the protection of the cohesin SYN1.
SGO1 but not SGO2 is required for maintenance of centromere cohesion in Arabidopsis thaliana meiosis.2013 · DOI: 10.1007/s00497-013-0231-x
Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.2013 · DOI: 10.1016/j.cub.2013.08.036
SHUGOSHINs and PATRONUS protect meiotic centromere cohesion in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12432

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0799100 Plays a central role in chromosome cohesion during meiosis I by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms.
OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis.2011 · DOI: 10.1111/j.1365-313x.2011.04615.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0034090maintenance of meiotic sister chromatid cohesionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=31.69; evalue=7.09e-26; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045144meiotic sister chromatid segregationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=31.69; evalue=7.09e-26; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.912; coverage=47.887; evalue=2.49e-22; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000775chromosome, centromeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=31.69; evalue=7.09e-26; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=31.69; evalue=7.09e-26; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.912; coverage=47.887; evalue=2.49e-22; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G10440KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.012; coverage=59.507; evalue=4.47e-25UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G04320KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=31.69; evalue=7.09e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0799100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.912; coverage=47.887; evalue=2.49e-22UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:606461KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.805; coverage=57.746; evalue=1.42e-21UniProtKB/Swiss-Prot DAT 2026 current_release