Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_033416 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:43328642-43331292 (-) |
| Description | Similar to LARP6B: La-related protein 6B (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_033416 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g43970 |
Transcriptional regulator. | No verified direct reference in this release |
At3g19090 |
Transcriptional regulator. | No verified direct reference in this release |
At5g46250 |
Transcriptional regulator. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.098; coverage=28.13; evalue=1.99e-13; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000494 | box C/D sno(s)RNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009846 | pollen germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010183 | pollen tube guidance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032897 | negative regulation of viral transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.098; coverage=28.13; evalue=1.99e-13; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036093 | germ cell proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.098; coverage=28.13; evalue=1.99e-13; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048024 | regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900087 | positive regulation of G1/S transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.098; coverage=28.13; evalue=1.99e-13; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904871 | positive regulation of protein localization to Cajal body | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905382 | positive regulation of snRNA transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990438 | U6 2'-O-snRNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017070 | U6 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048027 | mRNA 5'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097322 | 7SK snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G43970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=42.367; evalue=5.22e-96 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G19090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.679; coverage=55.06; evalue=1.62e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G46250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.463; coverage=58.148; evalue=3.5e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:334956 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.31; coverage=39.794; evalue=3.37e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:686883 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.098; coverage=28.13; evalue=1.99e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |