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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_032494
Query referenceOH1004
LocationChr07:24096088-24097059 (+)
DescriptionSimilar to PUB26: U-box domain-containing protein 26 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032494 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g49780 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g19380 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At2g35930 E3 ubiquitin-protein ligase that negatively regulates water stress response.
Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress.2008 · DOI: 10.1105/tpc.108.060699
Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.07.085
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200
At3g52450 E3 ubiquitin-protein ligase that negatively regulates water stress response.
Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress.2008 · DOI: 10.1105/tpc.108.060699
Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.07.085
The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis.2012 · DOI: 10.1105/tpc.112.104463

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0002679respiratory burst involved in defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.366; coverage=59.133; evalue=8.27e-12; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051865protein autoubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.366; coverage=59.133; evalue=8.27e-12; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.877; coverage=45.201; evalue=6.62e-08; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.366; coverage=59.133; evalue=8.27e-12; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070696transmembrane receptor protein serine/threonine kinase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.877; coverage=45.201; evalue=6.62e-08; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G49780KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.366; coverage=59.133; evalue=8.27e-12UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G35930KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.861; coverage=62.229; evalue=3.33e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G19380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.25; coverage=74.303; evalue=1.24e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G52450KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.931; coverage=49.226; evalue=5.34e-06UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G54850KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.877; coverage=45.201; evalue=6.62e-08UniProtKB/Swiss-Prot DAT 2026 current_release