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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_032145
Query referenceOH1004
LocationChr07:17432555-17432920 (-)
DescriptionSimilar to PUB31: U-box domain-containing protein 31 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032145 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65920 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g49810 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0232600 E3 ubiquitin ligase that may function as positive regulator of brassinosteroid (BR) signaling.
The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G α subunit to regulate Brassinosteroid-mediated growth in rice.2013 · DOI: 10.1371/journal.pgen.1003391
An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.2013 · DOI: 10.4161/psb.27117
Os06g0102700 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009742brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.177; coverage=93.388; evalue=5.22e-39; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.186; coverage=97.521; evalue=3.4e-56; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071472cellular response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.8; coverage=103.306; evalue=3.18e-48; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.172; coverage=47.934; evalue=7.29e-17; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900457regulation of brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.177; coverage=93.388; evalue=5.22e-39; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901001negative regulation of response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.8; coverage=103.306; evalue=3.18e-48; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.186; coverage=97.521; evalue=3.4e-56; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.172; coverage=47.934; evalue=7.29e-17; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.177; coverage=93.388; evalue=5.22e-39; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.172; coverage=47.934; evalue=7.29e-17; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.172; coverage=47.934; evalue=7.29e-17; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.186; coverage=97.521; evalue=3.4e-56; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G29340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.172; coverage=47.934; evalue=7.29e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G49810KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.8; coverage=103.306; evalue=3.18e-48UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G65920KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.186; coverage=97.521; evalue=3.4e-56UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0232600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.177; coverage=93.388; evalue=5.22e-39UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0102700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.627; coverage=48.76; evalue=1.16e-16UniProtKB/Swiss-Prot DAT 2026 current_release