Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_031317`
Query reference	OH1004
Location	Chr07:4466474-4468052 (-)
Description	Similar to MYB52: Transcription factor MYB52 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031317 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17950`	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325 Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.2013 · DOI: 10.3389/fpls.2013.00189
`At1g69560`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971
`At1g73410`	Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325
`At1g26780`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971 Characterization of constricted fruit (ctf) mutant uncovers a role for AtMYB117/LOF1 in ovule and fruit development in Arabidopsis thaliana.2011 · DOI: 10.1371/journal.pone.0018760

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0274800`	Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010199	organ boundary specification between lateral organs and the meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.452; coverage=62.207; evalue=2e-63; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901347	negative regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901348	positive regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000652	regulation of secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.636; coverage=36.789; evalue=6.63e-62; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G17950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.11; coverage=69.9; evalue=1.42e-68	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G26780	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=79.464; coverage=37.458; evalue=3.24e-60	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G69560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.452; coverage=62.207; evalue=2e-63	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G73410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.636; coverage=36.789; evalue=6.63e-62	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0274800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.825; coverage=38.127; evalue=1.35e-63	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4325181	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.825; coverage=38.127; evalue=1.35e-63	UniProtKB/Swiss-Prot DAT 2026 current_release