Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_031065`
Query reference	OH1004
Location	Chr06:127400601-127401627 (+)
Description	Similar to MYB80: Transcription factor MYB80 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031065 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56110`	Transcription factor that binds to the DNA sequence 5'- CCAACC-3'.	AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana.2003 · DOI: 10.1046/j.1365-313x.2003.01791.x Transcription factor AtMYB103 is required for anther development by regulating tapetum development, callose dissolution and exine formation in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03254.x The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.110.082651
`At4g21440`	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable).	Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene.2003 · DOI: 10.1104/pp.102.019273 The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae.2006 · DOI: 10.4161/psb.1.6.3512
`At4g05100`	Probable transcription factor that may function in salt stress response.	Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.2015 · DOI: 10.1093/jxb/erv312
`At4g28110`	Transcription factor involved in salt stress response.	AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.2009 · DOI: 10.1104/pp.108.134874 Phosphorylation by AtMPK6 is required for the biological function of AtMYB41 in Arabidopsis.2012 · DOI: 10.1016/j.bbrc.2012.04.137 AtMYB41 activates ectopic suberin synthesis and assembly in multiple plant species and cell types.2014 · DOI: 10.1111/tpj.12624

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0470600`	Essential for tapetum development in anthers and microsporogenesis.	MYB80, a regulator of tapetal and pollen development, is functionally conserved in crops.2012 · DOI: 10.1007/s11103-011-9855-0

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.719; coverage=54.633; evalue=9.65e-111; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.719; coverage=54.633; evalue=9.65e-111; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009825	multidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010090	trichome morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.719; coverage=54.633; evalue=9.65e-111; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010143	cutin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048658	anther wall tapetum development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080090	regulation of primary metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080091	regulation of raffinose metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.767; coverage=41.214; evalue=4.6e-63; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G05100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.767; coverage=41.214; evalue=4.6e-63	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G21440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=45.048; evalue=3.28e-64	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G28110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.531; coverage=40.895; evalue=4.73e-63	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G56110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=87.719; coverage=54.633; evalue=9.65e-111	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:9272494	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.406; coverage=119.489; evalue=6.63e-115	UniProtKB/Swiss-Prot DAT 2026 current_release