Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_030368`
Query reference	OH1004
Location	Chr06:114950494-114951464 (-)
Description	Similar to SCRM2: Transcription factor SCREAM2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030368 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 33 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12860`	Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA.	SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848
`At3g26744`	Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes.	SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048397 SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848
`At3g07800`	Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis.	Two thymidine kinases and one multisubstrate deoxyribonucleoside kinase salvage DNA precursors in Arabidopsis thaliana.2012 · DOI: 10.1111/j.1742-4658.2012.08747.x Arabidopsis thaliana thymidine kinase 1a is ubiquitously expressed during development and contributes to confer tolerance to genotoxic stress.2015 · DOI: 10.1007/s11103-014-0277-7
`At5g23070`	Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis.	Two thymidine kinases and one multisubstrate deoxyribonucleoside kinase salvage DNA precursors in Arabidopsis thaliana.2012 · DOI: 10.1111/j.1742-4658.2012.08747.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0113100`	Thymidine kinase.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006302	double-strand break repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006950	response to stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.098; coverage=29.286; evalue=1.09e-22; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010115	regulation of abscisic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010162	seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010225	response to UV-C	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010440	stomatal lineage progression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010444	guard mother cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046104	thymidine metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048317	seed morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050826	response to freezing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071897	DNA biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090351	seedling development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.455; coverage=35.357; evalue=2.71e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.455; coverage=35.357; evalue=2.71e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001046	core promoter sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004797	thymidine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G12860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.333; coverage=53.571; evalue=9.98e-33	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G07800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.475; coverage=35.357; evalue=6.04e-23	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G26744	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.986; coverage=78.929; evalue=1.48e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G23070	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.455; coverage=35.357; evalue=2.71e-21	UniProtKB/Swiss-Prot DAT 2026 current_release