Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_029446`
Query reference	OH1004
Location	Chr06:90830542-90832484 (+)
Description	Similar to NAC043: NAC domain-containing protein 43 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029446 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46770`	Transcription activator of genes involved in the biosynthesis of secondary walls.	The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence.2005 · DOI: 10.1105/tpc.105.036004 NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.2007 · DOI: 10.1105/tpc.106.047043 Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis.2007 · DOI: 10.1007/s00425-007-0498-y ZINC FINGER PROTEIN2 suppresses funiculus lignification to ensure seed loading efficiency in Arabidopsis.2025 · DOI: 10.1016/j.devcel.2025.01.021
`At1g32770`	Transcriptional activator of genes involved in biosynthesis of secondary walls.	SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis.2006 · DOI: 10.1105/tpc.106.047399 NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.2007 · DOI: 10.1105/tpc.106.047043 Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis.2007 · DOI: 10.1007/s00425-007-0498-y The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis.2007 · DOI: 10.1105/tpc.107.053678
`At3g61910`	Transcription activator of genes involved in biosynthesis of secondary walls.	The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence.2005 · DOI: 10.1105/tpc.105.036004
`At1g79580`	Transcription regulator.	No verified direct reference in this release
`At4g10350`	Transcription activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0003002	regionalization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.739; coverage=39.741; evalue=7.15e-90; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.739; coverage=39.741; evalue=7.15e-90; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010047	fruit dehiscence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010455	positive regulation of cell fate commitment	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.739; coverage=39.741; evalue=7.15e-90; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010628	positive regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.969; coverage=82.937; evalue=6.06e-89; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048829	root cap development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.739; coverage=39.741; evalue=7.15e-90; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=88.121; evalue=3.83e-103; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=88.121; evalue=3.83e-103; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G32770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=88.121; evalue=3.83e-103	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G79580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.739; coverage=39.741; evalue=7.15e-90	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G46770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.242; coverage=89.417; evalue=3.01e-117	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G61910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.329; coverage=84.017; evalue=1.33e-102	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G10350	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.969; coverage=82.937; evalue=6.06e-89	UniProtKB/Swiss-Prot DAT 2026 current_release