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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_028587
Query referenceOH1004
LocationChr06:46682174-46685267 (-)
DescriptionSimilar to SR45: Serine/arginine-rich splicing factor SR45 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028587 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g16610 Involved in 5' and 3' splicing site selection of introns, and may bridge the 5' and 3' components of the spliceosome.
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.2009 · DOI: 10.1104/pp.109.138180
The plant-specific SR45 protein negatively regulates glucose and ABA signaling during early seedling development in Arabidopsis.2010 · DOI: 10.1104/pp.110.155523
The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis.2012 · DOI: 10.4161/epi.7.1.18782
The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.2016 · DOI: 10.1105/tpc.16.00301

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000381regulation of alternative mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.268; coverage=22.824; evalue=3.55e-16; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010182sugar mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005681spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061574ASAP complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G16610KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.171; coverage=44.0; evalue=1.07e-57UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdre:327020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.5; coverage=18.824; evalue=1.17e-15UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:495230KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.455; coverage=18.118; evalue=4.3e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:735191KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.455; coverage=18.118; evalue=4.07e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxtr:548710KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.268; coverage=22.824; evalue=3.55e-16UniProtKB/Swiss-Prot DAT 2026 current_release