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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_028540
Query referenceOH1004
LocationChr06:45266192-45267870 (+)
DescriptionSimilar to NLP1: Protein NLP1 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028540 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76350 Probable transcription factor. No verified direct reference in this release
At4g24020 Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal.
The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2008.03695.x
At4g38340 Probable transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0131100 Probable transcription factor. No verified direct reference in this release
Os01g0236700 Probable transcription factor. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.167; coverage=31.169; evalue=3.73e-09; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010118stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010167response to nitrateBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.167; coverage=31.169; evalue=3.73e-09; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042128nitrate assimilationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.167; coverage=31.169; evalue=3.73e-09; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000987cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001046core promoter sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G76350KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.167; coverage=31.169; evalue=3.73e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G24020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=16.104; evalue=5.06e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G38340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.625; coverage=16.623; evalue=9.94e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0236700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.571; coverage=18.182; evalue=1.21e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0131100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4331508KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.189; coverage=19.221; evalue=9.22e-10UniProtKB/Swiss-Prot DAT 2026 current_release