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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_028537
Query referenceOH1004
LocationChr06:44808523-44810763 (+)
DescriptionSimilar to At1g03100: Pentatricopeptide repeat-containing protein At1g03100%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028537 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 2 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03100 Pentatricopeptide repeat-containing protein At1g03100, mitochondrial. No verified direct reference in this release
At4g17616 Pentatricopeptide repeat-containing protein At4g17616. No verified direct reference in this release
At1g69290 Pentatricopeptide repeat-containing protein At1g69290. No verified direct reference in this release
At1g68980 Pentatricopeptide repeat-containing protein At1g68980, mitochondrial. No verified direct reference in this release
At3g09650 Involved in the processing of polycistronic chloroplast psbB- psbT-psbH-petB-petD transcript.
The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts.2001 · DOI: 10.1105/tpc.010090
HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs.2003 · DOI: 10.1105/tpc.010397

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.027; coverage=98.928; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.015; coverage=45.174; evalue=2.93e-55; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G03100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.027; coverage=98.928; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G68980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.928; coverage=44.504; evalue=1.66e-47UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G69290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.015; coverage=45.174; evalue=2.93e-55UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G17616KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.579; coverage=91.287; evalue=3.95e-69UniProtKB/Swiss-Prot DAT 2026 current_release