Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027623 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:20528091-20535363 (-) |
| Description | Similar to CPSF30: 30-kDa cleavage and polyadenylation specificity factor 30 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027623 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 38 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g30460 |
Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation. |
Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.2006 · DOI: 10.1104/pp.105.070672 A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kDa subunit of cleavage and polyadenylation specificity factor.2007 · DOI: 10.1093/nar/gkm457 A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana.2008 · DOI: 10.1371/journal.pone.0002410 The Arabidopsis ortholog of the 77 kDa subunit of the cleavage stimulatory factor (AtCstF-77) involved in mRNA polyadenylation is an RNA-binding protein.2010 · DOI: 10.1016/j.febslet.2010.03.007
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os06g0677700 |
Zinc finger CCCH domain-containing protein 45. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007286 | spermatid development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009626 | plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031440 | regulation of mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034052 | positive regulation of plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034612 | response to tumor necrosis factor | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043068 | positive regulation of programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044829 | host-mediated activation of viral genome replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048024 | regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051321 | meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051729 | germline cell cycle switching, mitotic to meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070555 | response to interleukin-1 | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000031 | regulation of salicylic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035770 | ribonucleoprotein granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004521 | RNA endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005516 | calmodulin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008186 | ATP-dependent activity, acting on RNA | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034458 | 3'-5' RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070063 | RNA polymerase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990247 | N6-methyladenosine-containing RNA reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G30460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.188; coverage=82.734; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0677700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.61; coverage=84.532; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:64848 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.201; coverage=16.667; evalue=9.02e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:240255 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.201; coverage=16.667; evalue=5.7e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173406 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.201; coverage=16.667; evalue=5.62e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release |