Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_027502`
Query reference	OH1004
Location	Chr06:17505928-17507918 (-)
Description	Similar to LEC2: B3 domain-containing transcription factor LEC2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027502 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28300`	Transcription regulator that plays a central role in embryo development.	LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development.2001 · DOI: 10.1073/pnas.201413498 Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis.2008 · DOI: 10.1073/pnas.0712364105
`At3g24650`	Participates in abscisic acid-regulated gene expression during seed development.	A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.2009 · DOI: 10.1105/tpc.108.062968 ABI3 controls embryo degreening through Mendel's I locus.2013 · DOI: 10.1073/pnas.1308114110

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0911700`	Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development.	No verified direct reference in this release
`Os08g0101000`	Transcription regulator involved in iron deficiency response and tolerance.	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.2007 · DOI: 10.1073/pnas.0707010104

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009657	plastid organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.168; coverage=55.212; evalue=5.98e-21; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010262	somatic embryogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010344	seed oilbody biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010431	seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010601	positive regulation of auxin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031930	mitochondria-nucleus signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.168; coverage=55.212; evalue=5.98e-21; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.579; coverage=41.313; evalue=3.67e-19; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G28300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.961; coverage=78.378; evalue=1.44e-31	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.0; coverage=38.61; evalue=2.27e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0911700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.6; coverage=48.263; evalue=9.44e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0101000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.579; coverage=41.313; evalue=3.67e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542523	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.168; coverage=55.212; evalue=5.98e-21	UniProtKB/Swiss-Prot DAT 2026 current_release