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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_027159
Query referenceOH1004
LocationChr06:9811909-9812925 (+)
DescriptionSimilar to DYT1: Transcription factor DYT1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027159 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21330 Transcription factor.
Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor.2006 · DOI: 10.1242/dev.02463
At2g16910 Transcription factor. No verified direct reference in this release
At1g10610 Transcription factor bHLH90. No verified direct reference in this release
At3g26744 Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes.
SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048397
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0120500 Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.788; coverage=94.737; evalue=2.01e-20; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010115regulation of abscisic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010162seed dormancy processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010440stomatal lineage progressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048317seed morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048653anther developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048654anther morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048657anther wall tapetum cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048658anther wall tapetum developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050826response to freezingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.552; coverage=69.378; evalue=8.37e-17; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.788; coverage=94.737; evalue=2.01e-20; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000987cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001046core promoter sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.788; coverage=94.737; evalue=2.01e-20; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G10610KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.552; coverage=69.378; evalue=8.37e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G16910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.788; coverage=94.737; evalue=2.01e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G26744KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.261; coverage=88.038; evalue=1.92e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21330KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.407; coverage=87.081; evalue=5.24e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0120500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4328113KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.851; coverage=89.952; evalue=2.59e-20UniProtKB/Swiss-Prot DAT 2026 current_release