Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026818 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:3382033-3389962 (+) |
| Description | Similar to VPS53: Vacuolar protein sorting-associated protein 53 A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026818 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 22 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g50500 |
Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). |
Mutation in a homolog of yeast Vps53p accounts for the heat and osmotic hypersensitive phenotypes in Arabidopsis hit1-1 mutant.2006 · DOI: 10.1007/s00425-005-0216-6 The POK/AtVPS52 protein localizes to several distinct post-Golgi compartments in sporophytic and gametophytic cells.2008 · DOI: 10.1093/jxb/ern162
|
At1g50970 |
Involved in retrograde transport from early and late endosomes to late Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006622 | protein targeting to lysosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007009 | plasma membrane organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007041 | lysosomal transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010286 | heat acclimation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032456 | endocytic recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042147 | retrograde transport, endosome to Golgi | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090119 | vesicle-mediated cholesterol transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000938 | GARP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010008 | endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055037 | recycling endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990745 | EARP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G50500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.79; coverage=101.462; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G50970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.189; coverage=51.035; evalue=2.82e-159 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:68299 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.684; coverage=96.224; evalue=9.35e-153 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173757 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.61; coverage=95.371; evalue=1.57e-151 | UniProtKB/Swiss-Prot DAT 2026 current_release |