Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_026790`
Query reference	OH1004
Location	Chr06:2917764-2921315 (+)
Description	Similar to SOC1: MADS-box protein SOC1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026790 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45660`	May participate in transcriptional regulation of flowering time and floral development.	The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis.2000 · DOI: 10.1101/gad.813600 Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis.2008 · DOI: 10.1242/dev.020255 The Arabidopsis floral meristem identity genes AP1, AGL24 and SVP directly repress class B and C floral homeotic genes.2009 · DOI: 10.1111/j.1365-313x.2009.03985.x
`At5g62165`	MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time.	The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems.2011 · DOI: 10.1111/j.1365-313x.2011.04653.x
`At4g22950`	Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.	Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway.2006 · DOI: 10.1101/gad.377206
`At4g11880`	Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem.	The MADS transcription factor XAL2/AGL14 modulates auxin transport during Arabidopsis root development by regulating PIN expression.2013 · DOI: 10.1038/emboj.2013.216

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0122600`	Probable transcription factor active in flowering time control.	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice.2004 · DOI: 10.1111/j.1365-313x.2004.02082.x Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice.2003 · DOI: 10.1046/j.1467-7652.2003.00034.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009838	abscission	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.769; coverage=95.413; evalue=1.39e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.769; coverage=95.413; evalue=1.39e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009911	positive regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010048	vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.963; coverage=100.0; evalue=2.58e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010076	maintenance of floral meristem identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010077	maintenance of inflorescence meristem identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010082	regulation of root meristem growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.769; coverage=95.413; evalue=1.39e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.963; coverage=100.0; evalue=2.58e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050793	regulation of developmental process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.189; coverage=97.248; evalue=1.07e-70; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080187	floral organ senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.769; coverage=95.413; evalue=1.39e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000012	regulation of auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G45660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.441; coverage=97.706; evalue=1.9e-83	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G11880	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.349; coverage=98.624; evalue=6.55e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G22950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.963; coverage=100.0; evalue=2.58e-74	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G62165	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.769; coverage=95.413; evalue=1.39e-74	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0122600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.189; coverage=97.248; evalue=1.07e-70	UniProtKB/Swiss-Prot DAT 2026 current_release