Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026494 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:127347496-127350406 (+) |
| Description | Similar to HMGS: Hydroxymethylglutaryl-CoA synthase (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026494 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g11820 |
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006084 | acetyl-CoA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006629 | lipid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.219; coverage=99.563; evalue=2.87e-157; UniProt GO evidence=NAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006695 | cholesterol biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.219; coverage=99.563; evalue=2.87e-157; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010142 | farnesyl diphosphate biosynthetic process, mevalonate pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016126 | sterol biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033386 | geranylgeranyl diphosphate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033489 | cholesterol biosynthetic process via desmosterol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033490 | cholesterol biosynthetic process via lathosterol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036197 | zymosterol biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044351 | macropinocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.111; coverage=98.253; evalue=2.89e-165; UniProt GO evidence=IGI:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.219; coverage=99.563; evalue=2.87e-157; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004421 | hydroxymethylglutaryl-CoA synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G11820 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.035; coverage=100.218; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0288461 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.111; coverage=98.253; evalue=2.89e-165 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:3157 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.219; coverage=99.563; evalue=2.87e-157 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100174584 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.219; coverage=99.563; evalue=7.44e-158 | UniProtKB/Swiss-Prot DAT 2026 current_release |