Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026396 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:125770898-125774657 (+) |
| Description | Similar to PIAL2: E4 SUMO-protein ligase PIAL2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026396 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g41580 |
Together with MOM1 and PIAL1, regulates transcriptional gene silencing (TGS) independently of changes in DNA methylation. | |
At1g08910 |
Together with MOM1 and PIAL2, regulates transcriptional gene silencing (TGS) independently of changes in DNA methylation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007131 | reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016925 | protein sumoylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030999 | linear element assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031297 | replication fork processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032480 | negative regulation of type I interferon production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036299 | non-recombinational interstrand cross-link repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060339 | negative regulation of type I interferon-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060966 | regulation of gene silencing by regulatory ncRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072766 | centromere clustering at the mitotic interphase nuclear envelope | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0120290 | stalled replication fork localization to nuclear periphery | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905168 | positive regulation of double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035861 | site of double-strand break | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043596 | nuclear replication fork | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106068 | SUMO ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003712 | transcription coregulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016874 | ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019789 | SUMO transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061665 | SUMO ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G08910 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.709; coverage=50.545; evalue=1.32e-103 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G41580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.395; coverage=62.125; evalue=1.93e-125 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:406712 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.78; coverage=27.929; evalue=4.34e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:52915 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.294; coverage=13.896; evalue=6.12e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2541580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.984; coverage=34.605; evalue=3.27e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release |