Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025876`
Query reference	OH1004
Location	Chr05:118022850-118027596 (+)
Description	Similar to SH3P2: SH3 domain-containing protein 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025876 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 30 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34660`	May regulate autophagosome formation or maturation.	A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis.2013 · DOI: 10.1105/tpc.113.118307 SH3 Domain-Containing Protein 2 Plays a Crucial Role at the Step of Membrane Tubulation during Cell Plate Formation.2017 · DOI: 10.1105/tpc.17.00108
`At4g18060`	May be involved in the recruitment of DRP2A to the accessory protein complex and in the negative regulation of its GTPase activity.	No verified direct reference in this release
`At1g31440`	Lipid binding protein bound strongly to phosphatidic acid, phosphatidylinositol-4-phosphate and phosphatidylinositol-4,5- bisphosphate.	Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis.2001 · DOI: 10.1105/tpc.010279
`At2g38250`	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt.	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor.2004 · DOI: 10.1104/pp.104.041442
`At5g01380`	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'.	Analysis of GT-3a identifies a distinct subgroup of trihelix DNA-binding transcription factors in Arabidopsis.2004 · DOI: 10.1016/s0014-5793(04)00222-4

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0072583	clathrin-dependent endocytosis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1903527	positive regulation of membrane tubulation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000421	autophagosome membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005768	endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005770	late endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005776	autophagosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.725; coverage=46.939; evalue=2.68e-80; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.725; coverage=46.939; evalue=2.68e-80; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009504	cell plate	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012505	endomembrane system	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.725; coverage=46.939; evalue=2.68e-80; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016592	mediator complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030136	clathrin-coated vesicle	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090406	pollen tube	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005547	phosphatidylinositol-3,4,5-trisphosphate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030276	clathrin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.725; coverage=46.939; evalue=2.68e-80; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030674	protein-macromolecule adaptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032266	phosphatidylinositol-3-phosphate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043130	ubiquitin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043325	phosphatidylinositol-3,4-bisphosphate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G31440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.725; coverage=46.939; evalue=2.68e-80	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G38250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.023; coverage=36.905; evalue=1.09e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.592; coverage=60.374; evalue=2.46e-83	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G34660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.658; coverage=62.075; evalue=4.42e-97	UniProtKB/Swiss-Prot DAT 2026 current_release