Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025739 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:116156274-116157837 (+) |
| Description | Similar to PNSL5: Photosynthetic NDH subunit of lumenal location 5%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025739 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 31 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g13120 |
NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. | |
At3g62030 |
PPIases accelerate the folding of proteins. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000413 | protein peptidyl-prolyl isomerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006457 | protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007165 | signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009642 | response to light intensity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010275 | NAD(P)H dehydrogenase complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010555 | response to mannitol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019344 | L-cysteine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904027 | negative regulation of collagen fibril organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005788 | endoplasmic reticulum lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=64.516; evalue=1.73e-83; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009533 | chloroplast stromal thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009543 | chloroplast thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009579 | thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022626 | cytosolic ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031977 | thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048046 | apoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016018 | cyclosporin A binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043424 | protein histidine kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G62030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G13120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:396447 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80 | UniProtKB/Swiss-Prot DAT 2026 current_release |