Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025714`
Query reference	OH1004
Location	Chr05:115691877-115694901 (+)
Description	Similar to ORTH2: E3 ubiquitin-protein ligase ORTHRUS 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025714 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g57820`	E3 ubiquitin-protein ligase.	VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization.2007 · DOI: 10.1101/gad.1512007 ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.2008 · DOI: 10.1111/j.1365-313x.2008.03631.x Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.2008 · DOI: 10.1371/journal.pgen.1000156
`At5g39550`	E3 ubiquitin-protein ligase.	ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.2008 · DOI: 10.1111/j.1365-313x.2008.03631.x Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.2008 · DOI: 10.1371/journal.pgen.1000156
`At1g66040`	E3 ubiquitin-protein ligase.	No verified direct reference in this release
`At1g66050`	E3 ubiquitin-protein ligase.	ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.2008 · DOI: 10.1111/j.1365-313x.2008.03631.x Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.2008 · DOI: 10.1371/journal.pgen.1000156
`At1g57800`	E3 ubiquitin-protein ligase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.734; coverage=99.668; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031508	pericentric heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044027	negative regulation of gene expression via chromosomal CpG island methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051301	cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010369	chromocenter	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008327	methyl-CpG binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010385	double-stranded methylated DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010428	methyl-CpNpG binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010429	methyl-CpNpN binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042393	histone binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G57800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.537; coverage=101.824; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G57820	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.967; coverage=100.829; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G66040	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.399; coverage=99.668; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G66050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.233; coverage=99.668; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39550	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.734; coverage=99.668; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release