Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024784 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:98880713-98882354 (-) |
| Description | Similar to TFB4: General transcription and DNA repair factor IIH subunit TFB4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024784 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g18340 |
Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.762; coverage=101.779; evalue=4.45e-57; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.979; coverage=102.135; evalue=1.95e-57; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000438 | core TFIIH complex portion of holo TFIIH complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.979; coverage=102.135; evalue=1.95e-57; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000439 | transcription factor TFIIH core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.762; coverage=101.779; evalue=4.45e-57; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005669 | transcription factor TFIID complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.762; coverage=101.779; evalue=4.45e-57; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005675 | transcription factor TFIIH holo complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097550 | transcription preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.762; coverage=101.779; evalue=4.45e-57; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016251 | RNA polymerase II general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G18340 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.918; coverage=103.915; evalue=3.38e-140 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:511896 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.979; coverage=102.135; evalue=1.95e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2967 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.762; coverage=101.779; evalue=4.45e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:209357 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.631; coverage=102.135; evalue=9.82e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:288651 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.934; coverage=102.135; evalue=1e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release |