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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_024681
Query referenceOH1004
LocationChr05:96600695-96602902 (+)
DescriptionSimilar to FREE1: Protein FREE1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024681 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 40 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g20110 Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth.
A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.2014 · DOI: 10.1016/j.cub.2014.09.014
Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation.2015 · DOI: 10.1073/pnas.1421271112
FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.2015 · DOI: 10.1104/pp.114.253377
FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway.2016 · DOI: 10.1105/tpc.16.00178
The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489
At3g14270 The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Arabidopsis FAB1/PIKfyve proteins are essential for development of viable pollen.2009 · DOI: 10.1104/pp.109.146159
Loss-of-function and gain-of-function mutations in FAB1A/B impair endomembrane homeostasis, conferring pleiotropic developmental abnormalities in Arabidopsis.2011 · DOI: 10.1104/pp.110.167981

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007033vacuole organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009788negative regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010256endomembrane system organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035973aggrephagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036258multivesicular body assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042059negative regulation of epidermal growth factor receptor signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.0; coverage=11.407; evalue=9.33e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046854phosphatidylinositol phosphate biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060586multicellular organismal-level iron ion homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070676intralumenal vesicle formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090332stomatal closureBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900067regulation of cellular response to alkaline pHBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000421autophagosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000813ESCRT I complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005635nuclear envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005771multivesicular bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005776autophagosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016234inclusion bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031901early endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.0; coverage=11.407; evalue=9.33e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031902late endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031965nuclear membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.096; coverage=13.878; evalue=5.94e-13; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00002851-phosphatidylinositol-3-phosphate 5-kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003831beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00055451-phosphatidylinositol bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13; UniProt GO evidence=ISO:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043130ubiquitin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G20110KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.433; coverage=77.186; evalue=1.48e-145UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G14270KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.586; coverage=33.08; evalue=3.77e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcbr:CBG_14460KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.0; coverage=11.407; evalue=9.33e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:23001KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.096; coverage=13.878; evalue=5.94e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:72145KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=13.878; evalue=5.78e-13UniProtKB/Swiss-Prot DAT 2026 current_release