Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_024432`
Query reference	OH1004
Location	Chr05:90267585-90268798 (-)
Description	Similar to RAX3: Transcription factor RAX3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024432 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49690`	Transcription activator (By similarity).	Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis.2006 · DOI: 10.1105/tpc.105.038745
`At5g57620`	Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis.	MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root.2015 · DOI: 10.1073/pnas.1515576112
`At4g37780`	Transcription factor that functions as a regulator of genes affecting cell wall organization and remodeling.	Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.2014 · DOI: 10.1007/s10529-013-1451-8
`At2g36890`	Transcription activator (By similarity).	No verified direct reference in this release
`At5g23000`	Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2.	Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis.2006 · DOI: 10.1105/tpc.105.038745 Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development.2006 · DOI: 10.1105/tpc.105.038588

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008285	negative regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009664	plant-type cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=82.114; coverage=38.679; evalue=3.28e-73; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009785	blue light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.034; coverage=37.421; evalue=3.9e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045597	positive regulation of cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050801	monoatomic ion homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090506	axillary shoot meristem initiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=80.508; coverage=37.107; evalue=6.97e-67; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000067	regulation of root morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048226	Casparian strip	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G36890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.034; coverage=37.421; evalue=3.9e-71	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G49690	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.026; coverage=95.597; evalue=4.34e-82	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G37780	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=82.114; coverage=38.679; evalue=3.28e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G23000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=80.508; coverage=37.107; evalue=6.97e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G57620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=86.992; coverage=38.679; evalue=5.9e-77	UniProtKB/Swiss-Prot DAT 2026 current_release