Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_023513 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:46356618-46362919 (-) |
| Description | Similar to XRN3: 5'-3' exoribonuclease 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_023513 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g75660 |
Possesses 5'->3' exoribonuclease activity. | |
UniProt: Q9FQ02 |
Possesses 5'->3' exoribonuclease activity. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000956 | nuclear-transcribed mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000967 | rRNA 5'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006369 | termination of RNA polymerase II transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007017 | microtubule-based process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010587 | miRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016070 | RNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060149 | negative regulation of post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016235 | aggresome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001147 | transcription termination site sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004518 | nuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004534 | 5'-3' RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008409 | 5'-3' exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G75660 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.325; coverage=98.589; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G42540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.164; coverage=87.298; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:22803 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=91.23; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:24128 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.333; coverage=86.593; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173960 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.083; coverage=91.23; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |