RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_023287
Query referenceOH1004
LocationChr05:30733385-30734563 (+)
DescriptionSimilar to UBP4: Ubiquitin carboxyl-terminal hydrolase 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023287 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22310 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.
Ubiquitin-specific proteases from Arabidopsis thaliana: cloning of AtUBP5 and analysis of substrate specificity of AtUBP3, AtUBP4, and AtUBP5 using Escherichia coli in vivo and in vitro assays.2000 · DOI: 10.1006/abbi.2000.1874
The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.2007 · DOI: 10.1104/pp.106.095323
At4g39910 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.
Ubiquitin-specific proteases from Arabidopsis thaliana: cloning of AtUBP5 and analysis of substrate specificity of AtUBP3, AtUBP4, and AtUBP5 using Escherichia coli in vivo and in vitro assays.2000 · DOI: 10.1006/abbi.2000.1874
The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.2007 · DOI: 10.1104/pp.106.095323

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006508proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016579protein deubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031647regulation of protein stabilityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050862positive regulation of T cell receptor signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=89.455; evalue=6.21e-67; UniProt GO evidence=ISO:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060013righting reflexBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090263positive regulation of canonical Wnt signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=89.455; evalue=6.21e-67; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905368peptidase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004197cysteine-type endopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=89.455; evalue=6.21e-67; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004843cysteine-type deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0101005deubiquitinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G22310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.951; coverage=89.455; evalue=9.12e-118UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G39910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.084; coverage=90.545; evalue=2.49e-117UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:22217KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=89.455; evalue=6.21e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpon:100189895KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.964; coverage=89.818; evalue=9.54e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:289584KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.964; coverage=89.818; evalue=5.81e-67UniProtKB/Swiss-Prot DAT 2026 current_release