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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Search Results

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Gene IDLXL04_023055
Query referenceOH1004
LocationChr05:21247846-21252314 (+)
DescriptionSimilar to CRY2: Cryptochrome-2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023055 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 70 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g04400 Photoreceptor that mediates primarily blue light inhibition of hypocotyl elongation and photoperiodic control of floral initiation, and regulates other light responses, including circadian rhythms, tropic growth, stomata opening, guard cell development, root development, bacterial and viral pathogen responses, abiotic stress responses, cell cycles, programmed cell death, apical dominance, fruit and ovule development, seed dormancy, and magnetoreception.
At4g08920 May act as a blue-light receptor regulating hypocotyl elongation, flowering and other light responses.

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000719photoreactive repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.569; coverage=81.322; evalue=5.09e-92; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.563; coverage=78.678; evalue=4.93e-70; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009266response to temperature stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009583detection of light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009637response to blue lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009638phototropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009640photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009644response to high light intensityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009646response to absence of lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009785blue light signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009791post-embryonic developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.874; coverage=79.835; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009911positive regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010075regulation of meristem growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010114response to red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010117photoprotectionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010118stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010218response to far red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010244response to low fluence blue light stimulus by blue low-fluence systemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010310regulation of hydrogen peroxide metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010343singlet oxygen-mediated programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010617circadian regulation of calcium ion oscillationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032922circadian regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042752regulation of circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043153entrainment of circadian clock by photoperiodBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046283anthocyanin-containing compound metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046777protein autophosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048574long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048580regulation of post-embryonic developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.874; coverage=79.835; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048731system developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.874; coverage=79.835; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051510regulation of unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060918auxin transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071000response to magnetismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0072387flavin adenine dinucleotide metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0099402plant organ developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900426positive regulation of defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901332negative regulation of lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901371regulation of leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901529positive regulation of anion channel activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901672positive regulation of systemic acquired resistanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902347response to strigolactoneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902448positive regulation of shade avoidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000028regulation of photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000377regulation of reactive oxygen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.874; coverage=79.835; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000379positive regulation of reactive oxygen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000652regulation of secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016604nuclear bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003904deoxyribodipyrimidine photo-lyase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004672protein kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009882blue light photoreceptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016301kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071949FAD bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140517protein-RNA adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G04400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.842; coverage=96.529; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G08920KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.274; coverage=89.752; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGatu:Atu1218KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.569; coverage=81.322; evalue=5.09e-92UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyn:slr0854KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.563; coverage=78.678; evalue=4.93e-70UniProtKB/Swiss-Prot DAT 2026 current_release