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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_022581
Query referenceOH1004
LocationChr05:1948166-1949644 (-)
DescriptionSimilar to At4g01037: Protein WHAT'S THIS FACTOR 1 homolog%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022581 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g01037 RNA-binding protein involved in group II intron splicing. No verified direct reference in this release
At4g33495 Involved in pre-arranging the maintenance of the active cell proliferation during root primordium development. No verified direct reference in this release
At2g39120 RNA-binding protein involved in group II intron splicing.
A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.2012 · DOI: 10.1111/j.1365-313x.2011.04849.x

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0571100 RNA-binding protein involved in group II intron splicing. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000373Group II intron splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008285negative regulation of cell population proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.903; coverage=75.813; evalue=4.18e-42; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.329; coverage=92.073; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010102lateral root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.903; coverage=75.813; evalue=4.18e-42; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015979photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017004cytochrome complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.485; coverage=69.512; evalue=5.94e-28; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.903; coverage=75.813; evalue=4.18e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G39120KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.485; coverage=69.512; evalue=5.94e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G01037KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.315; coverage=105.081; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G33495KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.903; coverage=75.813; evalue=4.18e-42UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0571100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.329; coverage=92.073; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4339664KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.329; coverage=92.073; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100277394KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.471; coverage=90.65; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release