Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_022452`
Query reference	OH1004
Location	Chr04:150721849-150725562 (+)
Description	Similar to ARC3: Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022452 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75010`	Together with MIND1 and MCD1, regulates FtsZ ring positioning in chloroplasts in an ARC6-dependent manner.	The distinctive roles of five different ARC genes in the chloroplast division process in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00500.x ARC3, a chloroplast division factor, is a chimera of prokaryotic FtsZ and part of eukaryotic phosphatidylinositol-4-phosphate 5-kinase.2004 · DOI: 10.1093/pcp/pch130 Effects of arc3, arc5 and arc6 mutations on plastid morphology and stromule formation in green and nongreen tissues of Arabidopsis thaliana.2008 · DOI: 10.1111/j.1751-1097.2008.00437.x The chloroplast min system functions differentially in two specific nongreen plastids in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pone.0071190 FtsZ1/FtsZ2 Turnover in Chloroplasts and the Role of ARC3.2015 · DOI: 10.1017/s1431927615000082 MCD1 Associates with FtsZ Filaments via the Membrane-Tethering Protein ARC6 to Guide Chloroplast Division.2018 · DOI: 10.1105/tpc.18.00189 ARC3 Activation by PARC6 Promotes FtsZ-Ring Remodeling at the Chloroplast Division Site.2019 · DOI: 10.1105/tpc.18.00948
`At1g60890`	Phosphatidylinositol 4-phosphate 5-kinase 8.	No verified direct reference in this release
`At1g21980`	Catalyzes the synthesis of phosphatidylinositol 4,5- bisphosphate and phosphatidylinositol 3,4-bisphosphate.	AtPIP5K1, an Arabidopsis thaliana phosphatidylinositol phosphate kinase, synthesizes PtdIns(3,4)P(2) and PtdIns(4,5)P(2) in vitro and is inhibited by phosphorylation.2001 · DOI: 10.1042/0264-6021:3590583
`At3g07960`	Phosphatidylinositol 4-phosphate 5-kinase 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0701800`	Involved in flowering.	OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes.2004 · DOI: 10.1023/b:plan.0000028796.14336.24

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009657	plastid organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010020	chloroplast fission	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046854	phosphatidylinositol phosphate biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009707	chloroplast outer membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0098562	cytoplasmic side of membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003785	actin monomer binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.404; coverage=28.146; evalue=1.57e-15; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005525	GTP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051015	actin filament binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.404; coverage=28.146; evalue=1.57e-15; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052742	phosphatidylinositol kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.404; coverage=28.146; evalue=1.57e-15; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G21980	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.404; coverage=28.146; evalue=1.57e-15	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G60890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.37; coverage=17.185; evalue=1.19e-16	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G75010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.82; coverage=104.601; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release