Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_022280 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:147500200-147502144 (-) |
| Description | Similar to VAR3: Zinc finger protein VAR3%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022280 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 41 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g17790 |
Probable component of some protein complex required for chloroplast and palisade cell development. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001975 | response to amphetamine | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002224 | toll-like receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002753 | cytoplasmic pattern recognition receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006111 | regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006457 | protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006607 | NLS-bearing protein import into nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006913 | nucleocytoplasmic transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016925 | protein sumoylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045824 | negative regulation of innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046832 | negative regulation of RNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051168 | nuclear export | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=EXP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051642 | centrosome localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900871 | chloroplast mRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005635 | nuclear envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005642 | annulate lamellae | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005643 | nuclear pore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042405 | nuclear inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044614 | nuclear pore cytoplasmic filaments | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044615 | nuclear pore nuclear basket | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106068 | SUMO ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990723 | cytoplasmic periphery of the nuclear pore complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019209 | kinase activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019789 | SUMO transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=EXP:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030674 | protein-macromolecule adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031267 | small GTPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061665 | SUMO ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G17790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.571; coverage=78.322; evalue=5.22e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:19386 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.238; coverage=48.951; evalue=3.49e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |