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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_021996
Query referenceOH1004
LocationChr04:142238465-142241705 (+)
DescriptionSimilar to APRR7: Two-component response regulator-like APRR7 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021996 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g02810 Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression.
Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XFB7 Controls photoperiodic flowering response. No verified direct reference in this release
Os03g0284100 Controls photoperiodic flowering response. No verified direct reference in this release
UniProt: A2YQ93 Controls photoperiodic flowering response. No verified direct reference in this release
Os07g0695100 Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions.
Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.2013 · DOI: 10.1093/mp/sst088
Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.2014 · DOI: 10.1073/pnas.1418204111

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000160phosphorelay signal transduction systemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.727; coverage=99.003; evalue=4.17e-111; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009736cytokinin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.727; coverage=99.003; evalue=4.17e-111; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010017red or far-red light signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048511rhythmic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.032; coverage=110.399; evalue=4.2e-122; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048579negative regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.727; coverage=99.003; evalue=4.17e-111; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G02810KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.001; coverage=98.718; evalue=2.75e-135UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0284100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.774; coverage=110.399; evalue=6.22e-122UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0695100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.727; coverage=99.003; evalue=4.17e-111UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4344399KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.727; coverage=99.003; evalue=4.17e-111UniProtKB/Swiss-Prot DAT 2026 current_release