Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021759 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:136440505-136444666 (-) |
| Description | Similar to SIGA: RNA polymerase sigma factor sigA (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021759 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g64860 |
Essential protein. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os08g0163400 |
Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released (Probable). |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071461 | cellular response to redox state | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071482 | cellular response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080005 | photosystem stoichiometry adjustment | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001141 | regulation of RNA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.948; coverage=69.478; evalue=1.3e-49; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903865 | sigma factor antagonist complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.948; coverage=69.478; evalue=1.3e-49; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003899 | DNA-directed RNA polymerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016987 | sigma factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ana:all5263 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.948; coverage=69.478; evalue=1.3e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G64860 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.904; coverage=102.209; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os08g0163400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.518; coverage=104.217; evalue=3.36e-157 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4344738 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.518; coverage=104.217; evalue=3.36e-157 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | syf:Synpcc7942_0672 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.443; coverage=61.245; evalue=9.99e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | syf:Synpcc7942_1746 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.123; coverage=63.655; evalue=2.11e-46 | UniProtKB/Swiss-Prot DAT 2026 current_release |