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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_021241
Query referenceOH1004
LocationChr04:125303884-125307387 (-)
DescriptionSimilar to CLPR2: ATP-dependent Clp protease proteolytic subunit-related protein 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021241 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12410 Required for chloroplast development and integrity.
Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.2006 · DOI: 10.1105/tpc.106.042861
At4g10180 Component of light signal transduction machinery.
Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes.2004 · DOI: 10.1101/gad.1229504
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.2018 · DOI: 10.7554/elife.37892
DET1 represses a chloroplast blue light-responsive promoter in a developmental and tissue-specific manner in Arabidopsis thaliana.1998 · DOI: 10.1046/j.1365-313x.1998.00078.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0005975carbohydrate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.338; coverage=18.735; evalue=2.74e-22; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006515protein quality control for misfolded or incompletely synthesized proteinsBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032436positive regulation of proteasomal ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.338; coverage=18.735; evalue=2.74e-22; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=14.112; evalue=9.46e-11; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009368endopeptidase Clp complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009840chloroplastic endopeptidase Clp complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031461cullin-RING ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004176ATP-dependent peptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004252serine-type endopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031625ubiquitin protein ligase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051117ATPase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990756ubiquitin-like ligase-substrate adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G12410KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.27; coverage=18.005; evalue=5.59e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G10180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.338; coverage=18.735; evalue=2.74e-22UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcyp:PCC8801_0943KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.786; coverage=13.625; evalue=3.75e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpma:Pro_1388KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=14.112; evalue=9.46e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:778329KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.709; coverage=36.74; evalue=7.49e-26UniProtKB/Swiss-Prot DAT 2026 current_release