Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_020604 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:94446559-94449090 (+) |
| Description | Similar to 4CLL1: 4-coumarate--CoA ligase-like 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020604 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g62940 |
Carboxylate--CoA ligase that may use 4-coumarate as substrate. | No verified direct reference in this release |
At3g21240 |
Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0310700 |
Carboxylate--CoA ligase that may use 4-coumarate as substrate. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0007623 | circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.674; coverage=98.907; evalue=2.91e-130; UniProt GO evidence=IEP:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.674; coverage=98.907; evalue=2.91e-130; UniProt GO evidence=IEP:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009620 | response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.674; coverage=98.907; evalue=2.91e-130; UniProt GO evidence=IEP:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009698 | phenylpropanoid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.448; coverage=97.632; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009800 | cinnamic acid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009803 | cinnamic acid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033494 | ferulate metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046949 | fatty-acyl-CoA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0052315 | phytoalexin biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080110 | sporopollenin biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004467 | long-chain fatty acid-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016207 | 4-coumarate-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.448; coverage=97.632; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016405 | CoA-ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0018858 | benzoate-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031956 | medium-chain fatty acid-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050563 | trans-feruloyl-CoA synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.361; coverage=97.814; evalue=8.21e-127; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106286 | (E)-caffeate-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.674; coverage=98.907; evalue=2.91e-130; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106290 | trans-cinnamate-CoA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.448; coverage=97.632; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G62940 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.978; coverage=97.268; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G21240 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.674; coverage=98.907; evalue=2.91e-130 | UniProtKB/Swiss-Prot DAT 2026 current_release |