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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_019485
Query referenceOH1004
LocationChr04:32351100-32351711 (-)
DescriptionSimilar to AGL62: Agamous-like MADS-box protein AGL62 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_019485 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60440 Probable transcription factor.
The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis.2008 · DOI: 10.1105/tpc.107.055137
At2g24840 Probable transcription factor.
AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis.2008 · DOI: 10.1104/pp.108.119404
The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules.2008 · DOI: 10.1105/tpc.108.058958

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009559embryo sac central cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.347; coverage=82.266; evalue=1.49e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000012regulation of auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043078polar nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.347; coverage=82.266; evalue=1.49e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G24840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.347; coverage=82.266; evalue=1.49e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G60440KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=30.337; coverage=87.685; evalue=1.55e-10UniProtKB/Swiss-Prot DAT 2026 current_release