Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_019474`
Query reference	OH1004
Location	Chr04:32212347-32216315 (+)
Description	Similar to CPRF2: Light-inducible protein CPRF2 (Petroselinum crispum OX%3D4043)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_019474 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28770`	Transcription factor involved in controlling responses to starvation.	SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.2015 · DOI: 10.7554/elife.05828
`At4g02640`	Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters.	Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2.2003 · DOI: 10.1074/jbc.m210538200 Combinatorial control of Arabidopsis proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors.2006 · DOI: 10.1038/sj.emboj.7601206 bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection.2006 · DOI: 10.1038/sj.emboj.7601312 A nuclear gene encoding the iron-sulfur subunit of mitochondrial complex II is regulated by B3 domain transcription factors during seed development in Arabidopsis.2009 · DOI: 10.1104/pp.109.136531 A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.2009 · DOI: 10.1105/tpc.108.062968
`At3g54620`	Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g.	Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2.2003 · DOI: 10.1074/jbc.m210538200 A nuclear gene encoding the iron-sulfur subunit of mitochondrial complex II is regulated by B3 domain transcription factors during seed development in Arabidopsis.2009 · DOI: 10.1104/pp.109.136531 A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.2009 · DOI: 10.1105/tpc.108.062968

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0796900`	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002240	response to molecule of oomycetes origin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.264; coverage=98.06; evalue=4.7e-121; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009267	cellular response to starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009626	plant-type hypersensitive response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009649	entrainment of circadian clock	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071215	cellular response to abscisic acid stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071333	cellular response to glucose stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000693	positive regulation of seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.264; coverage=98.06; evalue=4.7e-121; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.264; coverage=98.06; evalue=4.7e-121; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.264; coverage=98.06; evalue=4.7e-121; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019900	kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045735	nutrient reservoir activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046982	protein heterodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.264; coverage=98.06; evalue=4.7e-121; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G54620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.162; coverage=77.371; evalue=2.97e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G02640	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.429; coverage=75.431; evalue=2.6e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G28770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.089; coverage=96.767; evalue=9.57e-77	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0796900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.296; coverage=69.828; evalue=2.82e-58	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4334424	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.296; coverage=69.828; evalue=2.82e-58	UniProtKB/Swiss-Prot DAT 2026 current_release