Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_019262`
Query reference	OH1004
Location	Chr04:27533145-27534633 (-)
Description	Similar to Ycf3-interacting protein 1%2C chloroplastic (Nicotiana tabacum OX%3D4097)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_019262 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44650`	Nuclear genome-encoded factor that participates in photosystem I (PSI) biogenesis.	Y3IP1, a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem I assembly of tobacco and Arabidopsis.2010 · DOI: 10.1105/tpc.110.073908 A novel chloroplast protein, CEST induces tolerance to multiple environmental stresses and reduces photooxidative damage in transgenic Arabidopsis.2011 · DOI: 10.1093/jxb/erq290

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0798500`	Involved in light-induced chloroplast development and growth.	A novel chloroplast protein, CEST induces tolerance to multiple environmental stresses and reduces photooxidative damage in transgenic Arabidopsis.2011 · DOI: 10.1093/jxb/erq290
`UniProt: B8AAV3`	Involved in light-induced chloroplast development and growth.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010286	heat acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042538	hyperosmotic salinity response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048564	photosystem I assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.727; coverage=64.469; evalue=1.78e-89; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080183	response to photooxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.727; coverage=64.469; evalue=1.78e-89; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.727; coverage=64.469; evalue=1.78e-89; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009579	thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G44650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.797; coverage=64.835; evalue=1.99e-86	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0798500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.715; coverage=65.568; evalue=3.65e-77	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	nta:107817932	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.727; coverage=64.469; evalue=1.78e-89	UniProtKB/Swiss-Prot DAT 2026 current_release