Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_019029 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:22356768-22358573 (+) |
| Description | Similar to SKIPA: SNW/SKI-interacting protein A (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019029 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 45 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g77180 |
Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0759800 |
Acts as a positive regulator of drought and salt tolerance. | |
Os06g0218000 |
SNW/SKI-interacting protein B. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010555 | response to mannitol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043923 | host-mediated activation of viral transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048026 | positive regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048255 | mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048384 | retinoic acid receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048385 | regulation of retinoic acid receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048511 | rhythmic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070562 | regulation of vitamin D receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070564 | positive regulation of vitamin D receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071300 | cellular response to retinoic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901002 | positive regulation of response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902584 | positive regulation of response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071007 | U2-type catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005112 | Notch binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016922 | nuclear receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IPI:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036002 | pre-mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042809 | nuclear vitamin D receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042974 | nuclear retinoic acid receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046332 | SMAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050681 | nuclear androgen receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143; UniProt GO evidence=IPI:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G77180 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.412; coverage=104.16; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0759800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:22938 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.518; coverage=86.356; evalue=9.66e-143 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:107275655 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.06; coverage=94.176; evalue=6.48e-156 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4330796 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.169; coverage=104.16; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100174597 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.711; coverage=86.356; evalue=2.85e-143 | UniProtKB/Swiss-Prot DAT 2026 current_release |