Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_018627 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:15778525-15779745 (+) |
| Description | Similar to At2g19790: AP-4 complex subunit sigma (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018627 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g19790 |
Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006605 | protein targeting | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.738; coverage=98.601; evalue=1.43e-60; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.738; coverage=98.601; evalue=1.38e-59; UniProt GO evidence=TAS:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008104 | intracellular protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.738; coverage=98.601; evalue=1.43e-60; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016192 | vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005905 | clathrin-coated pit | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030124 | AP-4 adaptor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031904 | endosome lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.738; coverage=98.601; evalue=1.43e-60; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032588 | trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.738; coverage=98.601; evalue=1.43e-60; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G19790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.07; coverage=99.301; evalue=4.09e-99 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:618267 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.738; coverage=98.601; evalue=2.27e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0284905 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.574; coverage=98.601; evalue=5.38e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:11154 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.738; coverage=98.601; evalue=1.43e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:11782 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.738; coverage=98.601; evalue=1.38e-59 | UniProtKB/Swiss-Prot DAT 2026 current_release |