Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_018407`
Query reference	OH1004
Location	Chr04:12541882-12542843 (-)
Description	Similar to PYM: Protein POLYCHOME (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018407 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42260`	Negative regulator of the anaphase-promoting complex/cyclosome (APC/C) ubiquitin ligase required for proper mitotic progression and cell fate determination; inhibits premature cell differentiation.	A mutation in the uvi4 gene promotes progression of endo-reduplication and confers increased tolerance towards ultraviolet B light.2006 · DOI: 10.1111/j.1365-313x.2006.02696.x GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092049 Arabidopsis ULTRAVIOLET-B-INSENSITIVE4 maintains cell division activity by temporal inhibition of the anaphase-promoting complex/cyclosome.2011 · DOI: 10.1105/tpc.111.091793 Roles of GIG1 and UVI4 in genome duplication in Arabidopsis thaliana.2012 · DOI: 10.4161/psb.21133 Perturbation of cell cycle regulation triggers plant immune response via activation of disease resistance genes.2013 · DOI: 10.1073/pnas.1217024110
`At3g57860`	Negative regulator of the anaphase-promoting complex/cyclosome (APC/C) ubiquitin ligase required for proper mitotic and meiotic progression and cell fate determination.	GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092049 OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM.2012 · DOI: 10.1371/journal.pgen.1002865 Roles of GIG1 and UVI4 in genome duplication in Arabidopsis thaliana.2012 · DOI: 10.4161/psb.21133 Perturbation of cell cycle regulation triggers plant immune response via activation of disease resistance genes.2013 · DOI: 10.1073/pnas.1217024110 PATRONUS1 is expressed in meiotic prophase I to regulate centromeric cohesion in Arabidopsis and shows synthetic lethality with OSD1.2015 · DOI: 10.1186/s12870-015-0558-6

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006260	DNA replication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007088	regulation of mitotic nuclear division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007113	endomitotic cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007127	meiosis I	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007135	meiosis II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009561	megagametogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010091	trichome branching	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040020	regulation of meiotic nuclear division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042023	DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051301	cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051783	regulation of nuclear division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900426	positive regulation of defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904667	negative regulation of ubiquitin protein ligase activity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G42260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.357; coverage=104.869; evalue=2.32e-50	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G57860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.369; coverage=104.494; evalue=1.97e-47	UniProtKB/Swiss-Prot DAT 2026 current_release