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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_017946
Query referenceOH1004
LocationChr04:4147826-4149346 (+)
DescriptionSimilar to RID2: 18S rRNA (guanine-N(7))-methyltransferase RID2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017946 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g57280 Essential protein.
Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana.2003 · DOI: 10.1242/dev.00794
Genetic identification of Arabidopsis RID2 as an essential factor involved in pre-rRNA processing.2011 · DOI: 10.1111/j.1365-313x.2011.04574.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010078maintenance of root meristem identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048527lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070476rRNA (guanine-N7)-methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000234positive regulation of rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043527tRNA methyltransferase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048471perinuclear region of cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.703; coverage=100.0; evalue=1.11e-99; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008168methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.703; coverage=100.0; evalue=1.11e-99; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016435rRNA (guanine) methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046982protein heterodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G57280KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.973; coverage=100.0; evalue=2.55e-157UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:513878KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.536; coverage=98.986; evalue=1.1e-97UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0269722KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.832; coverage=100.338; evalue=3.42e-100UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:114049KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.703; coverage=100.0; evalue=1.11e-99UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:66138KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.932; coverage=99.662; evalue=6.69e-106UniProtKB/Swiss-Prot DAT 2026 current_release