Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017921`
Query reference	OH1004
Location	Chr04:3665628-3672384 (+)
Description	Similar to HKT1: Sodium transporter HKT1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017921 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10310`	Sodium transporter protein, which plays a central role in plant tolerance to salt.	The Arabidopsis HKT1 gene homolog mediates inward Na(+) currents in xenopus laevis oocytes and Na(+) uptake in Saccharomyces cerevisiae.2000 · DOI: 10.1104/pp.122.4.1249 AtHKT1 is a salt tolerance determinant that controls Na(+) entry into plant roots.2001 · DOI: 10.1073/pnas.241501798 Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants.2002 · DOI: 10.1073/pnas.082123799 Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis by genetic disruption of the Na+ transporter AtHKT1.2002 · DOI: 10.1016/s0014-5793(02)03488-9 Functional analysis of AtHKT1 in Arabidopsis shows that Na(+) recirculation by the phloem is crucial for salt tolerance.2003 · DOI: 10.1093/emboj/cdg207 AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta.2004 · DOI: 10.1104/pp.104.042234 Microarray-based rapid cloning of an ion accumulation deletion mutant in Arabidopsis thaliana.2004 · DOI: 10.1073/pnas.0404780101

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0175000`	Functions as a highly-selective sodium transporter.	Diversity in expression patterns and functional properties in the rice HKT transporter family.2009 · DOI: 10.1104/pp.109.138008 Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.2015 · DOI: 10.1093/jxb/erv069
`UniProt: A2WNZ9`	Sodium transporter that under salt stress mediates sodium exclusion in the phloem to prevent sodium transfer to young leaf blades and reproductive tissues (By similarity).	No verified direct reference in this release
`UniProt: Q93XI5`	Seems to be involved in regulation of potassium-sodium homeostasis.	No verified direct reference in this release
`Os01g0307500`	Sodium transporter that under salt stress mediates sodium exclusion in the phloem to prevent sodium transfer to young leaf blades and reproductive tissues.	OsHKT1;5 mediates Na+ exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.2017 · DOI: 10.1111/tpj.13595

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006813	potassium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006814	sodium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035725	sodium ion transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000649	regulation of sodium ion transmembrane transporter activity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.458; coverage=98.352; evalue=1.64e-126; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008324	monoatomic cation transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015079	potassium ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015081	sodium ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G10310	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.01; coverage=88.828; evalue=4.43e-143	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0307500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.458; coverage=98.352; evalue=1.64e-126	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0175000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4328468	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.743; coverage=92.491; evalue=6.43e-141	UniProtKB/Swiss-Prot DAT 2026 current_release