Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_017903 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:3271320-3274212 (-) |
| Description | Similar to At5g47430: E3 ubiquitin ligase PQT3-like (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_017903 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 31 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g47430 |
E3 ubiquitin ligase PQT3-like. | No verified direct reference in this release |
At4g17410 |
May act as an E3 ubiquitin ligase that negatively regulates oxidative stress tolerance. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006260 | DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006275 | regulation of DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010555 | response to mannitol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042542 | response to hydrogen peroxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046686 | response to cadmium ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072756 | cellular response to paraquat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901562 | response to paraquat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902883 | negative regulation of response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902884 | positive regulation of response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019901 | protein kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061659 | ubiquitin-like protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G17410 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.096; coverage=11.551; evalue=5.13e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G47430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.362; coverage=14.873; evalue=1.21e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:5930 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.437; coverage=11.234; evalue=1.24e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release |