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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_016790
Query referenceOH1004
LocationChr03:133765276-133767555 (-)
DescriptionSimilar to PCMP-A4: Pentatricopeptide repeat-containing protein At1g14470 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016790 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g14470 Pentatricopeptide repeat-containing protein At1g14470. No verified direct reference in this release
At3g22690 Pentatricopeptide repeat-containing protein At3g22690. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At2g29760 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009451RNA modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.639; coverage=70.092; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009644response to high light intensityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010027thylakoid membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010207photosystem II assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010214seed coat developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.407; coverage=90.646; evalue=7.02e-176; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010380regulation of chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048564photosystem I assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140547acquisition of seed longevityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.407; coverage=90.646; evalue=7.02e-176; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.639; coverage=70.092; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.639; coverage=70.092; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G14470KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.639; coverage=70.092; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G22690KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.816; coverage=105.929; evalue=2.48e-180UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G02750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.407; coverage=90.646; evalue=7.02e-176UniProtKB/Swiss-Prot DAT 2026 current_release