Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_016610 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:128794720-128801690 (-) |
| Description | Similar to At3g50940: AAA-ATPase At3g50940 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_016610 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g50940 |
AAA-ATPase At3g50940. | No verified direct reference in this release |
At3g50930 |
Protein HYPER-SENSITIVITY-RELATED 4. | No verified direct reference in this release |
At1g16890 |
Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. | |
At1g78870 |
Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. | |
At5g17760 |
AAA-ATPase At5g17760. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002237 | response to molecule of bacterial origin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006301 | DNA damage tolerance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006950 | response to stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.171; coverage=66.769; evalue=5.38e-91; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009626 | plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.33; coverage=64.769; evalue=7.97e-111; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009863 | salicylic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010039 | response to iron ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010053 | root epidermal cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012501 | programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.171; coverage=66.769; evalue=5.38e-91; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.078; coverage=23.538; evalue=2.68e-102; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005740 | mitochondrial envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005741 | mitochondrial outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.33; coverage=64.769; evalue=7.97e-111; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031372 | UBC13-MMS2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.33; coverage=64.769; evalue=7.97e-111; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.33; coverage=64.769; evalue=7.97e-111; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061631 | ubiquitin conjugating enzyme activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G16890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=97.386; coverage=23.538; evalue=1.98e-103 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G78870 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.078; coverage=23.538; evalue=2.68e-102 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G50930 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.233; coverage=66.154; evalue=1.12e-100 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G50940 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.33; coverage=64.769; evalue=7.97e-111 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G17760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.171; coverage=66.769; evalue=5.38e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release |