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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_016493
Query referenceOH1004
LocationChr03:124810375-124812930 (-)
DescriptionSimilar to RMA1: E3 ubiquitin-protein ligase RMA1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016493 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g03510 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1.
Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase.2001 · DOI: 10.1242/jcs.114.10.1949
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
Drought stress-induced Rma1H1, a RING membrane-anchor E3 ubiquitin ligase homolog, regulates aquaporin levels via ubiquitination in transgenic Arabidopsis plants.2009 · DOI: 10.1105/tpc.108.061994
At4g27470 E3 ubiquitin-protein ligase.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
At4g28270 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1.2010 · DOI: 10.1016/j.bbrc.2010.02.032

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006914autophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006970response to osmotic stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009723response to ethyleneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032527protein exit from endoplasmic reticulumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036503ERAD pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043161proteasome-mediated ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044314protein K27-linked ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045087innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045089positive regulation of innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051865protein autoubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060340positive regulation of type I interferon-mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071456cellular response to hypoxiaBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.081; coverage=99.197; evalue=1.29e-38; UniProt GO evidence=HEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140896cGAS/STING signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904294positive regulation of ERAD pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.174; coverage=92.369; evalue=1.33e-28; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005741mitochondrial outer membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043130ubiquitin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044390ubiquitin-like protein conjugating enzyme bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044877protein-containing complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G03510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.807; coverage=89.558; evalue=7.12e-42UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27470KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.081; coverage=99.197; evalue=1.29e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G28270KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.174; coverage=92.369; evalue=1.33e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcann:107855034KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.793; coverage=93.173; evalue=6.47e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:193670KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.414; coverage=39.759; evalue=6.51e-22UniProtKB/Swiss-Prot DAT 2026 current_release