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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_015036
Query referenceOH1004
LocationChr03:62210957-62216090 (+)
DescriptionSimilar to PIN1C: Probable auxin efflux carrier component 1c (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_015036 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 43 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73590 Acts as a component of the auxin efflux carrier; this activity is enhanced when activated by D6PK-mediated phosphorylation. No verified direct reference in this release
At2g01420 Acts as a component of the auxin efflux carrier.
Differential auxin-transporting activities of PIN-FORMED proteins in Arabidopsis root hair cells.2010 · DOI: 10.1104/pp.110.156505
Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.2019 · DOI: 10.1371/journal.pgen.1008023
Root System Depth in Arabidopsis Is Shaped by EXOCYST70A3 via the Dynamic Modulation of Auxin Transport.2019 · DOI: 10.1016/j.cell.2019.06.021
At1g70940 Acts as a component of the auxin efflux carrier.
Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.2019 · DOI: 10.1371/journal.pgen.1008023
Structures and mechanisms of the Arabidopsis auxin transporter PIN3.2022 · DOI: 10.1038/s41586-022-05142-w

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0232300 May act as a component of the auxin efflux carrier. No verified direct reference in this release
Os02g0743400 Acts as a component of the auxin efflux carrier.
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.2005 · DOI: 10.1093/pcp/pci183

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009606tropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009630gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009640photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009926auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009958positive gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010015root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.361; coverage=107.407; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010051xylem and phloem pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010229inflorescence developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010262somatic embryogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010315auxin export across the plasma membraneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010338leaf formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010358leaf shapingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048367shoot system developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048766root hair initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048767root hair elongationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048825cotyledon developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048826cotyledon morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048830adventitious root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.876; coverage=103.03; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060918auxin transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071469cellular response to alkaline pHBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.361; coverage=107.407; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009505plant-type cell wallCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009921auxin efflux carrier complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.876; coverage=103.03; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009925basal plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009986cell surfaceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010168ER bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012506vesicle membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016324apical plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016328lateral plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045177apical part of cellCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071944cell peripheryCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010329auxin efflux transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G70940KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.231; coverage=109.428; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G73590KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.406; coverage=105.387; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G01420KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.361; coverage=107.407; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0743400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.876; coverage=103.03; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0232300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.878; coverage=103.199; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4330700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.876; coverage=103.03; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release