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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_014727
Query referenceOH1004
LocationChr03:55652428-55655397 (+)
DescriptionSimilar to SMG7: Protein SMG7 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014727 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19400 Plays multiple roles in growth and development.
Arabidopsis SMG7 protein is required for exit from meiosis.2008 · DOI: 10.1242/jcs.027862
Meiotic progression in Arabidopsis is governed by complex regulatory interactions between SMG7, TDM1, and the meiosis I-specific cyclin TAM.2010 · DOI: 10.1105/tpc.110.078378
Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response.2012 · DOI: 10.1093/nar/gks195
At1g28260 May play a role in growth and development. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012501programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031347regulation of defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090306meiotic spindle assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000781chromosome, telomeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.777; coverage=48.376; evalue=1.23e-36; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000932P-bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005697telomerase holoenzyme complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.777; coverage=48.376; evalue=1.23e-36; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.77; coverage=87.123; evalue=1.26e-31; UniProt GO evidence=ISS:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.777; coverage=48.376; evalue=1.23e-36; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.77; coverage=87.123; evalue=1.26e-31; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004519endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.777; coverage=48.376; evalue=1.23e-36; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.777; coverage=48.376; evalue=1.23e-36; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042162telomeric DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051721protein phosphatase 2A bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.77; coverage=87.123; evalue=1.26e-31; UniProt GO evidence=ISS:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070034telomerase RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G28260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.701; coverage=66.009; evalue=1.9e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G19400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.622; coverage=76.682; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:226517KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.77; coverage=87.123; evalue=1.26e-31UniProtKB/Swiss-Prot DAT 2026 current_release